Package: SPAS 2024.1.31
SPAS: Stratified-Petersen Analysis System
The Stratified-Petersen Analysis System (SPAS) is designed to estimate abundance in two-sample capture-recapture experiments where the capture and recaptures are stratified. This is a generalization of the simple Lincoln-Petersen estimator. Strata may be defined in time or in space or both, and the s strata in which marking takes place may differ from the t strata in which recoveries take place. When s=t, SPAS reduces to the method described by Darroch (1961) <doi:10.2307/2332748>. When s<t, SPAS implements the methods described in Plante, Rivest, and Tremblay (1988) <doi:10.2307/2533994>. Schwarz and Taylor (1998) <doi:10.1139/f97-238> describe the use of SPAS in estimating return of salmon stratified by time and geography. A related package, BTSPAS, deals with temporal stratification where a spline is used to model the distribution of the population over time as it passes the second capture location. This is the R-version of the (now obsolete) standalone Windows program available at <https://home.cs.umanitoba.ca/~popan/spas/spas_home.html>.
Authors:
SPAS_2024.1.31.tar.gz
SPAS_2024.1.31.zip(r-4.5)SPAS_2024.1.31.zip(r-4.4)SPAS_2024.1.31.zip(r-4.3)
SPAS_2024.1.31.tgz(r-4.4-x86_64)SPAS_2024.1.31.tgz(r-4.4-arm64)SPAS_2024.1.31.tgz(r-4.3-x86_64)SPAS_2024.1.31.tgz(r-4.3-arm64)
SPAS_2024.1.31.tar.gz(r-4.5-noble)SPAS_2024.1.31.tar.gz(r-4.4-noble)
SPAS_2024.1.31.tgz(r-4.4-emscripten)SPAS_2024.1.31.tgz(r-4.3-emscripten)
SPAS.pdf |SPAS.html✨
SPAS/json (API)
NEWS
# Install 'SPAS' in R: |
install.packages('SPAS', repos = c('https://cschwarz-stat-sfu-ca.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/cschwarz-stat-sfu-ca/spas/issues
Last updated 10 months agofrom:73ba39ad5a. Checks:OK: 9. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 20 2024 |
R-4.5-win-x86_64 | OK | Nov 20 2024 |
R-4.5-linux-x86_64 | OK | Nov 20 2024 |
R-4.4-win-x86_64 | OK | Nov 20 2024 |
R-4.4-mac-x86_64 | OK | Nov 20 2024 |
R-4.4-mac-aarch64 | OK | Nov 20 2024 |
R-4.3-win-x86_64 | OK | Nov 20 2024 |
R-4.3-mac-x86_64 | OK | Nov 20 2024 |
R-4.3-mac-aarch64 | OK | Nov 20 2024 |
Exports:SPAS.autopoolSPAS.fit.modelSPAS.print.model
Dependencies:cliexpmfansigenericsgluelatticelifecyclemagrittrMASSMatrixmsmmvtnormnumDerivpillarpkgconfigplyrRcppRcppEigenreshape2rlangstringistringrsurvivaltibbleTMButf8vctrs
Automatic Pooling
Rendered fromAutomaticPooling.Rmd
usingknitr::rmarkdown
on Nov 20 2024.Last update: 2023-04-19
Started: 2023-04-19
Conne River 1991 Data
Rendered fromConne1991.Rmd
usingknitr::rmarkdown
on Nov 20 2024.Last update: 2023-04-19
Started: 2018-11-24
Conne River 1992 Data
Rendered fromConne1992.Rmd
usingknitr::rmarkdown
on Nov 20 2024.Last update: 2023-04-19
Started: 2018-11-24
Harrison River Female Chinook 2011 Data
Rendered fromHarrisonF2011.Rmd
usingknitr::rmarkdown
on Nov 20 2024.Last update: 2023-04-19
Started: 2018-11-24
Pooling Columns
Rendered fromPoolingColumns.Rmd
usingknitr::rmarkdown
on Nov 20 2024.Last update: 2023-04-19
Started: 2019-11-20
Testing for Pooled Petersen
Rendered fromTestingPooledPetersen.Rmd
usingknitr::rmarkdown
on Nov 20 2024.Last update: 2023-04-19
Started: 2019-11-18
Things that can go wrong
Rendered fromThingsThatGoWrong.Rmd
usingknitr::rmarkdown
on Nov 20 2024.Last update: 2023-04-19
Started: 2019-11-20